w3schools: Learn to Code On the w3schools site I was surprised to find a lot more than informational tutorial for Web coding such as CSS or PHP. The site offers a large number of well …
python
AlphaFold – run from ChimeraX
The new ChimeraX menu “Tools > Structure Prediction > AlphaFold” provides a simple interface to run AlphaFold2 Colab that does not require the user to know how to use a Jupyter Notebook.
R & Python workshops – Winter 2022
Summary (Free) Steenbock Library: R and python series (Free) SSCC (Social Science Computing Cooperative): SSCC Training Classes (low cost for UW) Software Carpentry: Software Carpentry @ UW-Madison Low cost registration ends January 5, 2022 See …
Do yourself a favor: learn Markdown – Episode 4. Reproducible reports
The message The essential message is this: stop using Copy/Paste from one program to another (e.g. a chart from Excel to Word) as this is a manual process that is not reproducible and can easily …
Download Google Drive Files using wget
The problem: transfer file between clouds Files on Google drive can be shared between users, but the default access to the file is via a web browser graphical interface. However, sometimes it may be useful, or even …
Data Analysis Workshops Winter 2021
SUMMARY: Check calendar for Free “R” and “Python” workshops (Steenbock Library.) “Introduction to R with RStudio,” “Data Wrangling in R” (SSCC – Social Science Computing Cooperative.) “Automating Tasks with the Unix Shell,” “Data Management with SQL,” “R: introduction / visualization / reports” (Software Carpentry through UW-Madison Data Science (fees apply).)
Data Analysis Workshops Fall 2020
SUMMARY: Check calendar for Free “R” and “Python” workshops (Steenbock Library.) “Introduction to R with RStudio,” “Data Wrangling in R” (SSCC – Social Science Computing Cooperative.) “Automating Tasks with the Unix Shell,” “Data Management with SQL,” “Introduction to Docker” (Software Carpentry through UW-Madison Data Science (fees apply).)
Docker PyMOL
PyMOL is a great program that runs natively on all 3 major platforms. However, I wanted to use a docker image that allegedly can run PyMOL (albeit an older version 1.8.2.) The reason might not …
R courses and tutorials. Classic, Tidyverse, Data Wrangling, ggplot2
This is a list of R material that I found online that I think can be useful as reference or as working material to learn R / RStudio / Mardkown. I’ll try to separate the …
Bioinformatics – which computer language should I learn first?
In the past years I have focused on what seemed to be the most useful bioinformatics tools for biologists that need to analyze data with software that does not have a graphical interface. The final …