The Fundamentals of Biochemistry: Interactive Tutorials from Colorado State University was created by Dr. David Fahrney and edited by Ben Robinson. The 10th edition contains 10 interactive tutorials of the planned 16 chapters. Link: https://bc401.bmb.colostate.edu/ …
PyMOL
Protein Backbone from alpha-Carbon
Building a Protein Backbone from alpha-Carbon Files containing only C-alpha ATOM records can be the result of modeling but can also be a step in structure resolution. Theoretical models are now deposited in the ModelArchive(*). …
Covid-19 protein structures movie
I previously wrote a small booklet using PyMOL to illustrate PyMOL scripting methods and highlight some SARS-CoV-2 (COVID-19) protein structures. These are explored closely in the following movie. The video below depicts COVID-19 protein structures …
Covid-19 Coloring Book and PyMOL scripts book
Update 1: reported in the CALS eNewsletter on April 17 [Archived May 2, 2020] Update 2: I compiled a table with more Covid-19 coloring books from other inspired sources. Friday, April 10, 2020 (“Good Friday”) …
PyMOL in book Exploring Protein Structure – Principles and Practice
This textbook introduces the basics of protein structure and logically explains how to use online software to explore the information in protein structure databases.
Docker PyMOL
PyMOL is a great program that runs natively on all 3 major platforms. However, I wanted to use a docker image that allegedly can run PyMOL (albeit an older version 1.8.2.) The reason might not …
PyMOL tutorial books released
Summary: The Biochem 660 PyMOL tutorial book has been split in 4 PDFs for easier read and download: Book 1: Molecular Graphics Essentials (Summary of methods to obtain 3D data; file formats) Book 2: PyMOL …