University of Wisconsin–Madison

Tag: script

No GUI PyMOL for high throughput images and optional Docker

Summary Computing a PNG image for each of 1,000 PDB files as a cartoon, color-coded by B factor. PyMOL without GUI PyMOL is routinely used by Biologists to illustrate molecules, using the graphical user interface (GUI.) However, there are situations where it may be beneficial to run PyMOL without using the mouse. I recently computed …

PowerShell – an opinionated primer

PowerShell One day I discovered that there was a Windows App called “PowerShell” while searching on my Windows 10 installation. I did not pay much attention to it even if I stumbled upon it a few times since. It seems that the early versions were present already in Windows 7, so in that sense it …

A great Unix tutorial suitable for beginners

…provides a wonderfully well done, easy to understand set of small tutorials, with exercises, each with an accompanying video that should make it easier for beginners that want to learn Unix command line / bash…. To make is faster to navigate the lessons and videos I have combined both into a simple table…