Latest announcements
Welcome!
Most of this web site is dedicated to tutorial materials, that can be found under the TUTORIALS menu above.
(Newest announcements show at right.
For all posts go to Blog.)
3D Molecular Structures Analysis with NCBI iCn3D
NCBI tutorial: iCn3D hands-on workshop “I see in 3D” (iCn3D) Structure Viewer is not only a web-based 3D viewer, but also a structure analysis tool interactively or in the batch mode […] – (Longer description.) …
Free New York Times through UW-Madison
Registering for The New York Times through UW-Madison All necessary information can be found at: https://www.library.wisc.edu/help/research-tips-tricks/registering-for-the-new-york-times-through-uw-madison/ duplicated below: UW-Madison students, faculty, and staff have free access to The New York Times Digital (NYTImes.com) through the UW-Madison …
Intermediate Research Software Development in Python
Intermediate Research Software Development in Python Greetings everyone and Club members, (apologies i you receive duplicates) This may be more of interest to intermediate/advanced Python users: A Spring Break mini course offered by the …
- More Announcements posts
Biochemistry Compute Cluster
The Biochemistry Computational Cluster (BCC) is a High Throughput Computing (HTC) environment available to the Department of Biochemistry and runs non-interactive jobs using HTCondor. …
Workshop subjects
These are a few of the main focus of the workshops in terms of software and areas of study: Molecular Graphics -PyMOL, Chimera, SybylX-, Molecular -Modelling MODELLER-, Data Analysis - R, Python, Markdown, Reproducible Research,…. Guest speakers are invited for additional topics or software demonstration (e.g. EndNote, MatLab…) …
Accessing the Biochemistry Computational Cluster
Please contact Jean-yves Sgro (jsgro@wisc.edu) for authorized access.
Workshops & Registration
Workshops are primarily focused on the needs of Biochemistry personnel from students to faculty, but often extended to Biomolecular Chemistry, Chemistry and other curious minds.
BCRF tutorials are typically two hours long and involve a lot of hands-on practice. All tutorial materials are available for individuals to use after courses or on their own.
Class size is kept small for better interaction and hands-on opportunities but occasionally can be augmented with two or three attendees bringing their laptops.
Instructor
Jean-Yves Sgro
Credentials: Ph.D.
Position title: Distinguished, Senior Scientist
Email:
jsgro
Jean-Yves Sgro, a senior scientist with years of experience in using and teaching computer programs, creates, organizes and teaches the workshops.
Jean-Yves has been at UW since 1986 after a Master in Physiology and a Ph.D. in Cellular and Molecular Biology (1) from the Joseph Fourier University (2), Grenoble, France, researched at the European Molecular Biology Laboratory (EMBL) (3) where he already used large computers for sequence analysis.
At the Institute for Molecular Virology (IMV) he continued developing computer expertise in addition to his wet-lab research – 3D molecular visualization (virusworld), RNA-folding predictions, sequence and data analysis…
In 1996 he joined the UW Biotechnology Center to better help Campus biologists analyze and visualize their data while continuing research at IMV until 2014 when this part-time position was transferred to the Biochemistry department where he organizes and teaches hands-on tutorials on molecular graphics, data analysis as a support to the department personnel.
Jean-Yves also volunteers as an intructor for the “Carpentries” global community data science workshops.
(1) Ph.D. Structural study of brome mosaic virus protein and RNA and of their interaction by covalent crosslinking
(2) Now part of Université Grenoble Alpes
(3) EMBL Grenoble “Outstation”
Publications:
https://orcid.org/0000-0002-2640-4949Interests
- Molecular Graphics
- Computational Methods
- Reproducible Research
Publications
Danger Virus movie: 2 minutes segment featuring Dr. Sgro
Education
- PhD in Cellular and Molecular Biology, 1986
Université Joseph Fourier, Grenoble, France
- EMBL Alumni
European Molecular Biology Laboratory (EMBL-Grenoble)