announcements

Announcements

Workshops and Special Announcements

  • AlphaFold A practical guide Online Tutorial – EBI-EMBL

    Summary This Free EBI/EMBL on-line course “AlphaFold, A practical guide” provides an understanding of the fundamental concepts behind AlphaFold2, how users can run protein predictions and integrate these predictions into their projects, and how AlphaFold2 …

  • 3D Protein Imager a PyMOL/Qutemol web alternative

    Summary Molecule of the Month In the year 2000 David Goodsell started to provide stories on the The Protein Data Bank web site as the “molecule of the month” with his unique style that was …

  • NCBI-Workshops

    Summary The National Center for Biotechnology Information (NCBI) offers events, including workshops hands-on, interactive training sessions. All events are listed on the NCBI Outreach Events page. Workshop recordings and materials remain available after the live …

  • R and Python workshops on Campus – Winter 2024

      Summary Workshop Series available on Campus on R and Python: – Biochem – Social Science Computing Cooperative (SSCC) – UW Libraries – SSteenbock Library Workshops – Computational Biology, Ecology, & Evolution (ComBEE) Study Groups …

  • Faster image creation in PyMOL: Shortcuts and Docker

    Summary PyMOL command scripts are available natively and within Docker images. PyMOL Scripts PyMOL offers a very easy-to-use graphical user interface (GUI) to manipulate loaded molecule, and alter the appearance and coloring options. However, while …

  • Install Local Docker Desktop on macOS without Admin

    Summary Instructions to install Docker on macOS for which user does not have Admin privileges. These instructions are meant for iMacs in Biochem 201 but should work on any Mac. Procedure Download Docker Desktop from …

  • Five ways to run AlphaFold

    What is AlphaFold AlphaFold can accurately predict 3D models of protein structures by providing an amino acid sequence. (Ref: Deep Mind.) The AlphaFold network directly predicts the 3D coordinates of all heavy atoms for a …

  • Centralizing R & Python Data Projects: Posit Cloud Essentials Event

    Cloud event Users of RStudio may be interested in this monthly event presented by “Posit” which is the new name of the company that produces RStudio, as the software can be used with many more …

  • R and Python workshops on Campus – Fall 2023

    Summary Workshop Series available on Campus on R and Python: Biochem SSCC UW Libraries R and Python at Biochem R and Python “Clubs” were established in late 2022. The Python Club is currently closed but …

  • AlphaFold2 on Macintosh M1

    Summary This post is a summary of installation of AlphaFold2 onto a Macintosh with an M1 style (arm64) computer chip (i.e. not an Intel/AMD Chip.) This post started with the blog post Installing Alphafold2 on …

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