NCBI Magic-BLAST Workshop The intermediate level workshop Analyzing & Visualizing NextGen Reads with Magic-BLAST – [Archived] is designed for biologists who are comfortable working with the command-line (bash) and who are interested in performing some early analysis on their next-generation sequence data in comparison to an annotated reference sequence. – Materials: Analyzing & Visualizing NextGen Reads …
3D Protein structure prediction (4) This YouTube video from the European Bioinformatics Institute – EMBL-EBI webinar was recorded on 08 September 2021 This webinar will introduce AlphaFold system for prediction and interpretation of protein structures. This webinar is designed for experimental biologists who wish to understand the strengths and limitations of AlphaFold and use the …
The new ChimeraX menu “Tools > Structure Prediction > AlphaFold” provides a simple interface to run AlphaFold2 Colab that does not require the user to know how to use a Jupyter Notebook.
DeepMind and Google have created a method to access the code on GitHub. All the details to install AlphaFold locally are on the “readme” page, visible on the lower portion of the GitHub page ColabFold (See my Blog: Google colab is a free cloud notebook environment).
Introduction Google Colab is a free cloud-based service that allows the execution of Python code using the Jupyter Notebook format. It is possible to use and install new python libraries. Furthermore it is possible to provide bash commands from the notebook and there are backdoor ways to even use R. The Python code uses only …
The problem: transfer file between clouds Files on Google drive can be shared between users, but the default access to the file is via a web browser graphical interface. However, sometimes it may be useful, or even necessary, to access and download a file from a command line, for example downloading the file with the wget utility. …