University of Wisconsin–Madison

Category: Uncategorized

Python NumPy 2.0 incompatibilities

Summary The new Numpy 2.0 is not compatible with many other packages, as I discovered after many lost hours. The final Docker images can be downloaded from alleleanalyzer. NumPy in a Docker I was interested to implement a process involving Python packages from a paper published in 2019: “AlleleAnalyzer: a tool for personalized and allele-specific …

Foundational concepts to understand AI: free online curricula

Summary Alignment Course is an online curriculum that provides materials in a useful order to learn fundamentals. The Governance Course offers similar material at the beginning, but then moves towards governance (regulations etc.). Within the first “SESSION” both offer a video insight titled: How ChatGPT Works Technically. Wisconsin AI Safety Initiative Founded in Spring 2023, the …

Structural Bioinformatics with PyMOL plugin PyMod 3

Summary The PyMOD 3 version of the plug-in provides GUI interface within PyMOL for many bioinformatics tools such as BLAST, HMMER, Clustal, MUSCLE, PSIPRED, DOPE, and MODELLER. Web page: http://schubert.bio.uniroma1.it/pymod/ GitHub: https://github.com/pymodproject/pymod Reference Giacomo Janson, Alessandro Paiardini, PyMod 3: a complete suite for structural bioinformatics in PyMOL, Bioinformatics, Volume 37, Issue 10, 15 May 2021, …

w3schools code tutorials

w3schools: Learn to Code On the w3schools site I was surprised to find a lot more than informational tutorial for Web coding such as CSS or PHP.  The site offers a large number of well organized,  self-paced tutorials on a much larger scale. Coding languages Here are a few that I find particularly useful to …

Google Docs Tutorials

Google Docs is Free Google Docs is a free, web-based document creator system to create and collaborate on online documents in real-time and from any device. The type of documents that can be created can be text, notes, spreadsheet, drawing, slides, and web pages, each with a separate editor. The Wikipedia entry for Google Docs …