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  1. Home
  2. Tag: bioinformatics

bioinformatics

Jupytext 2-way reformat of Jupyter notebooks

Posted on March 29, 2023

Jupytext can save and reformat Jupyter notebooks I was trying to test a Jupyter notebook from NCBI titled “Getting Started with NCBI Data in Python” (March 2, 2022) that is now on a “Binder” web …

Posted in bioinformatics, Computing, Markdown, PythonTagged bioinformatics, Jupiter, jupyter lab, jupyter notebook, markdown, python, Rmarkdown

Intermediate Research Software Development in Python

Posted on February 5, 2023

  Intermediate Research Software Development in Python Greetings everyone and Club members, (apologies i you receive duplicates) This may be more of interest to intermediate/advanced Python users: A Spring Break mini course offered by the …

Posted in Announcements, bioinformatics, Computing, PythonTagged bioinformatics, python, Software Carpentry, software developmement

New classroom, computers, workshops

Posted on October 6, 2022

New classroom, computers, workshops New Apple Macintosh M1 computers are ready for hosting new workshops in person again. Apple M1 Macintosh The classroom is now equipped with Macintosh mac-mini computers with the new M1 chip. …

Posted in Announcements, bioinformatics, Books, Computing, Programming, Python, RTagged bioinformatics, books, computing, python, R, workshops

bioinformatics tutorials

Posted on June 26, 2020

  June 26, 2020. I have added a new entry under the “Tutorials” menu for “bioinformatics” to provide a place for tutorials that are more than just about one subject. “bioinformatics is the science of …

Posted in Announcements, bash, bioinformatics, Docker, sequence analysis, VirologyTagged alium, bioinformatics, coronavirus, COVID19, Docker, pistil, SARS, SARS-CoV-2, sequence analysis, spike protein

Bioinformatics – which computer language should I learn first?

Posted on November 21, 2019

In the past years I have focused on what seemed to be the most useful bioinformatics tools for biologists that need to analyze data with software that does not have a graphical interface. The final …

Posted in bash, bioinformatics, Programming, Python, RTagged bioinformatics, computer language, data analysis, programming, python, R, RStudio

Docker notes – Bypass entrypoint

Posted on October 31, 2019

When activated by docker run some docker container immediately start a software within. This can be useful for the author of the image, but for others it may cause issues. Here is one example amongst many, …

Posted in DockerTagged --it, bash, bioinformatics, Docker, docker file, entry point, ENTRYPOINT, rm, run

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