Free courses This new page lists professional courses available to UW-Madison personnel at LinkedIn Learning (previously Lynda.com) and just requires a NetID. The page has been added on the new “Software Resources” top menu for …
Year: 2022
Do yourself a favor: learn Markdown โ Episode 5. BibTeX interface for PubMed
Summary A web site to create BibTex entries for bibliography in R Markdown. R and Markdown This is a follow-up on 4 “Episodes” in previous posts titled “Do yourself a favor: learn Markdown…” To add …
Structural Bioinformatics with PyMOL plugin PyMod 3
Summary The PyMOD 3 version of the plug-in provides GUI interface within PyMOL for many bioinformatics tools such as BLAST, HMMER, Clustal, MUSCLE, PSIPRED, DOPE, and MODELLER. Web page: http://schubert.bio.uniroma1.it/pymod/ GitHub: https://github.com/pymodproject/pymod Reference Giacomo Janson, …
PyMOL resources, books and references
NOTE: this post becoming too long, its content is now moved and updated on the page: PyMOL Resoruces PyMOL resources Summary This post provides resources on PyMOL What is PyMOL and how to get it …
How BLAST Works and Using Web BLAST Effectively
NCBI BLAST Workshop The NCBI workshop is designed for beginning BLAST users or people wanting a refresher on how blast works and some tips on how to run effective BLAST searches. – Materials: 2022-10_Basic-Web-BLAST – …
Chateaubriand STEM Fellowship
Note: Updated November 30, 2022 Chateaubriand Fellowship The Chateaubriand Fellowship allows PhD students registered in an American university the opportunity to spend 4โ9 months in France. The fellowship aims to initiate or reinforce collaborations or …
New classroom, computers, workshops
New classroom, computers, workshops New Apple Macintosh M1 computers are ready for hosting new workshops in person again. Apple M1 Macintosh The classroom is now equipped with Macintosh mac-mini computers with the new M1 chip. …
Visual introduction to CryoEM
Cryo-Electron Microscopy Cryogenic electron microscopy (cryo-EM) is a cryomicroscopy technique applied on samples cooled to cryogenic temperatures (i.e. very cold!.) For biological specimens, the structure is preserved by embedding in an environment of vitreous ice. …
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Becoming a Data Scientist If you are interested to become a data scientist, the following free resources and books would be very helpful. Free books using R These and other books aan be accessed for …
Accessing BOX on macOS with command line
UW personnel has access to Box, a cloud drive to store documents. While the older “Box Sync” application kept a copy of every file and folder on the local computer, the newer “box drive” …