Matlab logo in composite image from Open Access Textbook ‘Bioimage Data Analysis’, Edited by Kota Miura

Matlab – Molecule Tracking


TUTORIAL 1 – Single Molecule Tracking & Microscopy Image Analyzes with MATLAB

(last updated: October 2018)

External link resource(s):

  • Open Access Textbook “Bioimage Data Analysis”, Edited by Kota Miura
  • Interview: Kota Miura talks about the Bioimage Data Analysis Book (video, 21 min)


  • Zhan, Hong, Elle Kielar-Grevstad, and Kate O’Connor-Giles. “Precise Protein Localization in Dissected Drosophila Larvae by Correlative Light and Transmission Electron Microscopy.” Microscopy and Microanalysis 24.S1 (2018): 1372-1373.
  • Bruckner, Joseph J., et al.Fife organizes synaptic vesicles and calcium channels for high-probability neurotransmitter release.” J Cell Biol 216.1 (2017): 231-246.
  • Zhan, Hong, et al. “Three-dimensional imaging of Drosophila motor synapses reveals ultrastructural organizational patterns.” Journal of neurogenetics 30.3-4 (2016): 237-246.
  • Zhan, Hong, et al. “Disease Phenotyping with Sub-Resolution Precision by Single Molecule Tracking in Live Animals.” Biophysical Journal 108.2 (2015): 36a.
  • Zhan, Hong, et al. “In vivo single-molecule imaging identifies altered dynamics of calcium channels in dystrophin-mutant C. elegans.” Nature communications 5 (2014): 4974.