Tutorial(s)
TUTORIAL 1 – Single Molecule Tracking & Microscopy Image Analyzes with MATLAB
(last updated: October 2018)
- Instructions hand out: PDF (hands-on-instructions-single-molecule-tracking-microscopy-image-analyzes-with-matlab.pdf)
- Slides hand out: PDF (imaging-analysis-with-matlab-2018.10.25-hong.pdf)
- Materials: see “go.wisc.edu” link within Instructions hand out above.
External link resource(s):
- Open Access Textbook “Bioimage Data Analysis”, Edited by Kota Miura
- The downloadable .zip file contains the PDF, e-Pub and mobi version of the book, without DRM.
- Chapter 4: Introduction to Matlab: .zip file of Code
- Interview: Kota Miura talks about the Bioimage Data Analysis Book (video, 21 min)
REFERENCES:
- Zhan, Hong, Elle Kielar-Grevstad, and Kate O’Connor-Giles. “Precise Protein Localization in Dissected Drosophila Larvae by Correlative Light and Transmission Electron Microscopy.” Microscopy and Microanalysis 24.S1 (2018): 1372-1373. https://doi.org/10.1017/S1431927618007341
- Bruckner, Joseph J., et al. “Fife organizes synaptic vesicles and calcium channels for high-probability neurotransmitter release.” J Cell Biol 216.1 (2017): 231-246. https://doi.org/10.1083/jcb.201601098
- Zhan, Hong, et al. “Three-dimensional imaging of Drosophila motor synapses reveals ultrastructural organizational patterns.” Journal of neurogenetics 30.3-4 (2016): 237-246. https://doi.org/10.1080/01677063.2016.1253693
- Zhan, Hong, et al. “Disease Phenotyping with Sub-Resolution Precision by Single Molecule Tracking in Live Animals.” Biophysical Journal 108.2 (2015): 36a. https://doi.org/10.1016/j.bpj.2014.11.222
- Zhan, Hong, et al. “In vivo single-molecule imaging identifies altered dynamics of calcium channels in dystrophin-mutant C. elegans.” Nature communications 5 (2014): 4974. http://dx.doi.org/10.1038/ncomms5974