Intelligent Systems for Molecular Biology – in Madison
The International Society for Computational Biology (ISMB) Conference held the Intelligent Systems for Molecular Biology (ISMB) in Madison in July 2022.
Conference details are still available online, but more importantly a special “Bioinformatics” journal issue has been compiled from the proceedings of this conference:
Volume 38, Issue Supplement_1
July 2022
ISSN 1367-4803
EISSN 1367-4811
Most articles link to available code.
My Highlights
– Chris S Magnano, Fangzhou Mu, Rosemary S Russ, Milica Cvetkovic, Debora Treu, Anthony Gitter, An approachable, flexible and practical machine learning workshop for biologists, Bioinformatics, Volume 38, Issue Supplement_1, July 2022, Pages i10–i18, https://doi.org/10.1093/bioinformatics/btac233
Code: https://carpentries-incubator.github.io/ml4bio-workshop/
Code: https://carpentries-incubator.github.io/ml4bio-workshop/
– Xiaoyue Cui, Yifan Xue, Collin McCormack, Alejandro Garces, Thomas W Rachman, Yang Yi, Maureen Stolzer, Dannie Durand, Simulating domain architecture evolution, Bioinformatics, Volume 38, Issue Supplement_1, July 2022, Pages i134–i142, https://doi.org/10.1093/bioinformatics/btac242
Code: DomArchov is written in Python 3 and is available at http://www.cs.cmu.edu/~durand/DomArchov
Code: DomArchov is written in Python 3 and is available at http://www.cs.cmu.edu/~durand/DomArchov
– Iliana Papadopoulou, An-Phi Nguyen, Anna Weber, María Rodríguez Martínez, DECODE: a computational pipeline to discover T cell receptor binding rules, Bioinformatics, Volume 38, Issue Supplement_1, July 2022, Pages i246–i254, https://doi.org/10.1093/bioinformatics/btac257
CODE: https://github.com/phineasng/DECODE
CODE: https://github.com/phineasng/DECODE
Notes: