Welcome!

Most of this web site is dedicated to tutorial materials, that can be found under the TUTORIALS menu above. For all posts, go to Blog.

As of July 2026, Jean-Yves Sgro has retired from UW–Madison, and this website is no longer being updated.

If you are interested in workshops, visit the Biotech Center Workshops webpage.

If you are interested in accessing the Biochemistry Compute Cluster (BCC), visit the affiliated CALS Information Technology KB page.

  • UW Free Computing Badger Compute and CHTC

    Summary Two resources for free computing at UW–Madison offered by the Center for High Throughput Computing (CHTC): – BadgerCompute: badgercompute.wisc.edu/ for Jupyter-based interactive notebooks in R, Python, or Julia computer programming languages.…

  • Bioinformatics, R, Python, and more on Campus – Fall 2025

    Summary Workshop Series available on Campus on R and Python. (For more details see further below.) – UW Libraries – Steenbock Library Workshops – UW Data Science Hub / Software Carpentry –…

  • ChatMOL: PyMOL ChatGPT Plugin with Free chatlite version

    Summary ChatMol is a ChatGPT plugin that offers a Free chatlite version that does not require an API key. ChatMol ChatMol is a PyMOL plugin based on  large language models, that provide…

processor by ColiN00B on Pixabay

The Biochemistry Computational Cluster (BCC) is a High Throughput Computing (HTC) environment available to the Department of Biochemistry and runs non-interactive jobs using HTCondor.

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Studied subjects as font awesome icons

These are a few of the main focus of the workshops in terms of software and areas of study: Molecular Graphics -PyMOL, Chimera, SybylX-, Molecular -Modelling MODELLER-, Data Analysis – R, Python, Markdown, Reproducible Research,…. Guest speakers are invited for additional topics or software demonstration (e.g. EndNote, MatLab…) …

Accessing the Biochemistry Compute Cluster

Please contact the CALS IT Help Desk for authorized access, and the CALS IT KB for more details.