World of Viruses “World of Viruses comics” from the University of Nebraska are available free on-line as PDF or for reading online. A nice way to educate oneself and younger ones while seemingly having fun! …
Year: 2020
Covid-19 Coloring Book and PyMOL scripts book
Update 1: reported in the CALS eNewsletter on April 17 [Archived May 2, 2020] Update 2: I compiled a table with more Covid-19 coloring books from other inspired sources. Friday, April 10, 2020 (“Good Friday”) …
How To Think Like a Computer Scientist and other FREE “Think books”
I regularly roam the Internet in search of solutions to simple questions and often find the answers in sites such as stackoverflow.com, biostars.org or similar forums. Once in a while I find interesting, free materials, …
PyMOL in book Exploring Protein Structure – Principles and Practice
This textbook introduces the basics of protein structure and logically explains how to use online software to explore the information in protein structure databases.
Docker PyMOL
PyMOL is a great program that runs natively on all 3 major platforms. However, I wanted to use a docker image that allegedly can run PyMOL (albeit an older version 1.8.2.) The reason might not …
R courses and tutorials. Classic, Tidyverse, Data Wrangling, ggplot2
This is a list of R material that I found online that I think can be useful as reference or as working material to learn R / RStudio / Mardkown. I’ll try to separate the …
TableConvert.com – free tabular data formats converter
Tabular formats When I first came to Madison in 1986 as a postdoc with Biochemistry professor Paul Kaesberg to learn cloning and sequencing, I was surprised when he said that the most important program to …
GENESIS – All-atom Molecular Dynamics Simulation
In 1992 I attended a molecular graphics visualization and simulation somewhere in Texas, organized by Keck. One of the presenter had a movie of molecular dynamics of a protein that forever changed my mental view …
PyMOL 2.x License and updates
PyMOL license needs update Attention PyMOL users. The UW license is set to expire on January 15th, 2020. The license is required for running PyMOL starting with version 2.o and works for now on all …
R/Python/Reproducible Research Workshops on Campus – Winter 2020
Winter 2020 Programming Workshops on Campus In the past years I have offered python 3, R, and RStudio workshops within the Biochem Department (see links below.) R is both a language and a software environment for …