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Biochemistry Computational Research Facility (BCRF)
Biochemistry Department – UW Madison
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  1. Home
  2. Year: 2020
  3. Month: January

Month: January 2020

TableConvert.com – free tabular data formats converter

Posted on January 28, 2020

Tabular formats When I first came to Madison in 1986 as a postdoc with Biochemistry professor Paul Kaesberg to learn cloning and sequencing, I was surprised when he said that the most important program to …

Posted in bioinformatics, Programming, R

GENESIS – All-atom Molecular Dynamics Simulation

Posted on January 14, 2020

In 1992 I attended a molecular graphics visualization and simulation somewhere in Texas, organized by Keck. One of the presenter had a movie of molecular dynamics of a protein that forever changed my mental view …

Posted in Molecular Dynamics, Molecular GraphicsTagged molecular dynamics, Molecular Graphics, molecules, simulation, visualization

PyMOL 2.x License and updates

Posted on January 9, 2020

PyMOL license needs update Attention PyMOL users. The UW license is set to expire on January 15th, 2020. The license is required for running PyMOL starting with version 2.o and works for now on all …

Posted in Announcements

R/Python/Reproducible Research Workshops on Campus – Winter 2020

Posted on January 2, 2020

Winter 2020 Programming Workshops on Campus In the past years I have offered python 3, R, and RStudio workshops within the Biochem Department (see links below.) R is both a language and a software environment for …

Posted in Announcements, Programming, Python, R

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